MmuEX0015716 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45426628-45427646:+
Coord C1 exon
chr9:45426628-45426693
Coord A exon
chr9:45427224-45427340
Coord C2 exon
chr9:45427450-45427646
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATGAGTTTCTCCTTCAACAGGAA
3' ss Score
8.23
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGGCTTGTCCTAGTTAATTCTCACCTGACTTCCTGCCAAAGATGCTGAGCTGTCTCCACTTTCCAG
Seq A exon
GAAGGGGCACAATGAAACAATGACTCCCATAGGCTAGGGTGGTGTGAGAAGGCAGCAGAAGACAGGACAGGAAAGAAGACAAGTGGACCCTGTCACTTCCTGTATGACCTCAGACAG
Seq C2 exon
ACAACAAGCCACCTACCCAAAAGCTGGCCCAACCACCGGGGACGGCTGCACAGCAAAGAGCAAGCAACTGCTAGGGTCTGGAGACCTGAATTCTTCAAGTCTGGTGATCCTGTGTGAGCCTCAATTTCCTAGCCAGTTTTAAAGGAGCCTGATGAAACTTTCATAGACTTTATGGGAGTTACACAGAGTAATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACCTGACTTCCTGCCAA
R:
GCGATTACTCTGTGTAACTCCCA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types