MmuEX0016414 @ mm10
Exon Skipping
Gene
ENSMUSG00000063600 | Egfem1
Description
EGF-like and EMI domain containing 1 [Source:MGI Symbol;Acc:MGI:1922990]
Coordinates
chr3:29670566-29686796:+
Coord C1 exon
chr3:29670566-29670739
Coord A exon
chr3:29685178-29685341
Coord C2 exon
chr3:29686668-29686796
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTGTGTCTTCTCAGGTA
3' ss Score
10.8
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TCTGTTTAGATGGCACCTTTGGCCTGGACTGCAGCTTGAGCTGTGAAGATTGTATGAATGGAGGAAGATGCCAAGAAGGAAAGAGTGGGTGCTTGTGCCCAGCAGAATGGACTGGTCTTATATGCAATGAAAGCAGTGTCCTAAGAACTGGGGAAGATCAGCAAGCTCCTGCGG
Seq A exon
GTAATTTCTGCTCTGCCAGCCTGTCTTCCGGCTCCATTTTGCTCAGGCATGCGCTCCTGGTCCATCTTATCTAATGGAGAGCTACTGTTCCTTTGTCTTCTTCCTCGTTTACTTTCTCTCCTTTTCTTTTTCCCTCTTGGTCCCTACGTGTGACCCCTAGCCAG
Seq C2 exon
GATGCCTGAAAGGGTTCTTTGGGAAGAACTGCAAAAGAAAATGTCATTGTGCTAACAATGTTCATTGCCACAGGGTATATGGTGCCTGCATGTGTGACCTAGGGCGCTATGGAAGATTCTGCCACCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063600_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000119598fB1442
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGCCTGGACTGCAG
R:
GTCACACATGCAGGCACCATA
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types