MmuEX0017307 @ mm10
Exon Skipping
Gene
ENSMUSG00000030929 | Eri2
Description
exoribonuclease 2 [Source:MGI Symbol;Acc:MGI:1918401]
Coordinates
chr7:119791101-119792498:-
Coord C1 exon
chr7:119792431-119792498
Coord A exon
chr7:119792265-119792343
Coord C2 exon
chr7:119791101-119791228
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTGGTCTTTTGCAGAACAGTTG
3' ss Score
1.27
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GCGGCTTGGATTAATTAGGAGAAAGTCAGTTACACCAGCAAGTGGAAATCCAGGAGGGAGCAGATTGA
Seq A exon
TTGTATGCCTACTTAATTGTCGTTGACTTTGAGTCTACCTGCTGGAATGATGGGAAGCACCACAGTAGCCCTGAAATAA
Seq C2 exon
TTGAATTTCCAGCAGTTTTGTTGAATACAGCAACTGGAGAGATTGAATCTGAGTTTCATGCTTACGTTCAGCCTCAAGAACATCCAATTCTTTCTGAATTTTGCACAGAACTGACAGGGATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030929-'3-5,'3-4,4-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(7.1=41.7)
A:
NO
C2:
PF0092919=RNase_T=FE(22.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAGTCAGTTACACCAGCA
R:
TCCCTGTCAGTTCTGTGCAAA
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types