MmuEX0017497 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107821705-107842300:-
Coord C1 exon
chr5:107842071-107842300
Coord A exon
chr5:107837421-107837446
Coord C2 exon
chr5:107821705-107821894
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTCTTACTAAAAATACAAAGGCA
3' ss Score
0.54
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCACTACACACTACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
Seq A exon
GCATTGGCAGAGATGAATTTAAGGAG
Seq C2 exon
ATTAATAGAGACAGACAGTAAGTCTTTAAGATCAGTGAATGGGTCAAGAAGAAACAGTGGTTCCTCTCTTGTATCAAGTTCATCAGCCTCCAGCAACCTCAGCCACCTGGAGGAAGACTCTTGGATTCTCTGGGGAAGAATTGTGAATGAATGGGATGATGTACGCAAGAAGAAAGAAAAGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831_MULTIEX2-1/4=C1-2
Average complexity
C1
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.685 A=1.000 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGCTAAGCTGGAGGAA
R:
GTTGCTGGAGGCTGATGAACT
Band lengths:
126-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types