MmuEX0019254 @ mm10
Exon Skipping
Gene
ENSMUSG00000075324 | Fign
Description
fidgetin [Source:MGI Symbol;Acc:MGI:1890647]
Coordinates
chr2:63971507-64098012:-
Coord C1 exon
chr2:64097842-64098012
Coord A exon
chr2:64027910-64027967
Coord C2 exon
chr2:63971507-63980899
Length
58 bp
Sequences
Splice sites
3' ss Seq
AAATGTATCTTGTATTCCAGGTC
3' ss Score
8.25
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAG
Seq A exon
GTCCCAGGTCTTTATGTATGGACACAAAGAATGATAGAATTCTAGGTCTTGGGAGGAG
Seq C2 exon
GCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAACAGCACTTTGACATCACCTCGACCACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCATTTACAGCGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCGTCCAACCTTCTGAAAAAATATGCAGAGAAGTATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACACACCATCAGGACTCGTGAATGGTCGGAAAAATGATAGCGAACCCTGGCAGCCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTGTGTCCCGGATGTCATCACTGCCAGCAAAGCTGGTGTCAGCTCAGCCCTCCCTCCAGTAGACGTCTCGGCAAGTATAGGGAGCTCCCCTGGGGTGGCCAGCAACCTGACAGAGCCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAGTACCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075324_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.440
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0000424=AAA=WD(100=17.4),PF093365=Vps4_C=WD(100=6.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCGATGCTACGCTAACC
R:
TAGGCTTCAACTTTGTGGGCG
Band lengths:
148-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types