MmuEX0019445 @ mm9
Exon Skipping
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122293046-122322585:-
Coord C1 exon
chr3:122322448-122322585
Coord A exon
chr3:122300686-122300785
Coord C2 exon
chr3:122293046-122293161
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCATGTGCTTATAATTTTAGTGC
3' ss Score
5.67
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GGGAACCCGGTGGTGGTGGCGGCAGCTTTCGAGGCAGACGCTGAGGAGGGGAAAGTCGGGACGAGAGAGGACAGCGGGAGCAGCCGGCCGGCGCCAGTCGCCTCAGGTTCCGCCATGAGCTGGGGCACCGAGCTGTGG
Seq A exon
TGCTGGAATGGAGGAACAAGAGGATCCCTGGAGCTCATAGGCCGGCCAGATGGAAGATGCCCAAGGAATGACATCTGAGACTGTCCACCACCCTCCACAT
Seq C2 exon
GATCAGTTCGACAGCTTAGATAAGCATACCCAATGGGGAATTGACTTCTTGGAAAGATATGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-'0-3,'0-0,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(7.5=87.5)
A:
NO
C2:
PF0061118=FCH=FE(48.1=100),PF115563=EBA-175_VI=PU(33.3=46.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGCGGCAGCTTTC
R:
CTCAATTGTTTCGCATAGTTCTGT
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types