MmuEX0020609 @ mm10
Exon Skipping
Gene
ENSMUSG00000032649 | Colgalt2
Description
collagen beta(1-O)galactosyltransferase 2 [Source:MGI Symbol;Acc:MGI:2138232]
Coordinates
chr1:152504078-152506999:+
Coord C1 exon
chr1:152504078-152504205
Coord A exon
chr1:152504497-152504590
Coord C2 exon
chr1:152506793-152506999
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTTTTTGTTTATGAGACT
3' ss Score
-2.7
5' ss Seq
AAAGTAAAG
5' ss Score
1.6
Exon sequences
Seq C1 exon
GTTATTGACCGAGAGCTGGAGAAGACTCTGGTCATCGAGGATGATGTGCGCTTTGAGCATCAGTTTAAGAGGAAGCTGATGAAGCTGATGGAGGACATTGACAAGGCTCAGCTGGACTGGGAACTAAT
Seq A exon
ACTGGAGTCACCCACCTGATCAGCGGCCTCTTGACAGAGCTGAGGAAACATCCTGAGGACCACTGGGGACAATGGTGGAAATTTCACCTGCAAA
Seq C2 exon
TTACATCGGTCGAAAAAGAATGCAAGTCAAAGAGCCAGAGAAGGCAGTGCCCAATGTTGTAAATCTCGTCGAAGCTGATTATTCCTACTGGACCCTGGGCTACGCCATTTCCCTGGAAGGAGCACAGAAGCTTGTCGGAGCCGATCCCTTTGGGAAGATGTTGCCAGTGGATGAGTTTCTGCCAATCATGTACAACAAGCATCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032649_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.6=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=PD(32.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGACAAGGCTCAGCTGG
R:
CGACAAGCTTCTGTGCTCCTT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types