MmuEX0020678 @ mm9
Exon Skipping
Gene
ENSMUSG00000073403 | Gm10499
Description
predicted gene 10499 [Source:MGI Symbol;Acc:MGI:3702919]
Coordinates
chr17:36279656-36280372:-
Coord C1 exon
chr17:36280097-36280372
Coord A exon
chr17:36279929-36279969
Coord C2 exon
chr17:36279656-36279887
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCTGTACCTGTCCTTCCCAGAGC
3' ss Score
8.66
5' ss Seq
GCTGTTCTT
5' ss Score
-19.96
Exon sequences
Seq C1 exon
ATCCCCCAAAAGCCCATGTGACCCATCACCCCAGATCTGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATAGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGGAACATGAGGGGCTGCCTGAGCACCTCACCCTGAGATGGG
Seq A exon
AGCCTCCTCCATCCACGGACTCCAACATGGTAATCATGGCT
Seq C2 exon
TACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGAAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGCCATCTCACCAGCCCATGGCTGTTCTTGTTGTCCTTGGAGCTGTGATCATCATTGGAGCTATGGTATCTTTTGTGTTGAAGAGCAGGAGAACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073403_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTGGGAAGGAGCAGAA
R:
GCTCACAACCATCCGTAACGA
Band lengths:
143-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: