MmuEX0020699 @ mm10
Exon Skipping
Gene
ENSMUSG00000078435 | AU041133
Description
expressed sequence AU041133 [Source:MGI Symbol;Acc:MGI:2143755]
Coordinates
chr10:82138253-82150277:+
Coord C1 exon
chr10:82138253-82138379
Coord A exon
chr10:82143587-82143619
Coord C2 exon
chr10:82150217-82150277
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTCTTTACCTTCCTCTGCAGGTT
3' ss Score
11.95
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTGCAGTGACCTATGAAGATGTGCATGTGAACTTCACTCACGAAGAGTGGGTTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAAGATGTGATGCTGGAAACCTACTGGAACCTCACTGCTATAG
Seq A exon
GTTGATCAGATCCACAGTGGTCATAAGGACCAG
Seq C2 exon
GATACAAATTGGAAGACCTGAATAGTGAGGAACACTCTCAGCGCTCTAGAAGATATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078435_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000201286fB1803
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTTGCTGGATCCTTCCC
R:
TAGAGCGCTGAGAGTGTTCCT
Band lengths:
126-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types