MmuEX0020799 @ mm9
Exon Skipping
Gene
ENSMUSG00000078496 | Gm13152
Description
predicted gene 13152 [Source:MGI Symbol;Acc:MGI:3701121]
Coordinates
chr4:146881695-146887595:+
Coord C1 exon
chr4:146881695-146881749
Coord A exon
chr4:146884862-146884988
Coord C2 exon
chr4:146886454-146887595
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAGGTAGTTTTCCATTACAGGGT
3' ss Score
4.49
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AGACCCTGGGAGAAGGACAACAAGAATGAGTGTGTTTCTGGTAAATACACCACAG
Seq A exon
GGTCTGTTAACCTTCAAGGATGTGGCCGTGGAATTCTCACTGGAGGAATGGGAACGTCTCAGTTTTGCTCAGAGGTCATTGTACATAGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGG
Seq C2 exon
AAAATCATTTCATATGTGCAAAGTGTGGGAAGGCCTTGGATGAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGAACAAGCTTAGCAATGTTATTCTTGAATCCCCCCATTGTGTACCTCACAAATGTAGTGAATGGGACAAATGCTTTTCCCAAAGATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCATACTGAGAATTCATCAGAAAATTCATTCAGGAGAGAAATCTTACAAATATCATGAATGTGACAAGTGCTTTCCCAAAAAATCCCATCTTAGTATTCATCTGAGAATTCATAAAGGAGAGAAACCCTACAAATGTAGTGACTGTGACAAATGCTTTACTGAAAAACGCAAACTGAGAAGGCATCAGAAAATTCATACAGGAGAAAAACCTTACAAATGTAGTGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078496-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3),PF0041217=LIM=PU(41.3=44.2)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0041217=LIM=PD(56.5=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGGAGAAGGACAACAA
R:
AGATGGGATCTTTGGGAAAAGCA
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types