MmuEX0020820 @ mm9
Exon Skipping
Gene
ENSMUSG00000085201 | Gm13507
Description
predicted gene 13507 [Source:MGI Symbol;Acc:MGI:3649430]
Coordinates
chr2:38678777-38707890:+
Coord C1 exon
chr2:38678777-38679089
Coord A exon
chr2:38693789-38693928
Coord C2 exon
chr2:38707735-38707890
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCCTTATTGCAGTGA
3' ss Score
8.93
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AAGCAGACAGGGCTGCAAGGAAACCTGGTGCGGTTCAATACCTTGTCTAGCCTGGGCTCCAGGATCTTTTTTTTTTTTTTTTTTTTAAACTGACAAACTCATTTTTCTACTGGGACAGGATGCTGTGCTGGCTGAAGTTCCATTTCTACAGCAAGAATCCTATCTGGAAGCACAGAAGTTGTCCTCTAGCCACAGCAGCTCCAACTTTTTTGTTGTTGCTGCTTTCTTCTATCACCCCCTTCCCCTTTTGACAAAGATCCAACTGTAGAAAGTCTTACGTAACAGTTCAGGACTACTTCGGTTCTTTTACCGG
Seq A exon
TGAAATGAAGCTGTGATAATGTGGTAAATATGGGGAGACACCAAGCTGTGGCTCTTGCGGACTTCAGCAGCACTGAAATGCAACACTGTGGGCTTTGGCAGCTGCATTCCGTACTCTGAAATTCTTATATCATTACTCTG
Seq C2 exon
GCAAACAAGAAGGAATTTGCTTGTTTGATTTAGCTCTGCAGTAAAGGTTCAAATCTGAGACTGGTAAAGGAAGGAGAAAGCAACATATCCAACCAATACTGGAACAATGAACTCTGGTGTTCAAGTTCTGGCTATGGAACTCCGGGTAAGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000085201_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTTTCTTCTATCACCCCC
R:
TACCCGGAGTTCCATAGCCAG
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: