MmuEX0020826 @ mm10
Exon Skipping
Gene
ENSMUSG00000087467 | Gm13601
Description
predicted gene 13601 [Source:MGI Symbol;Acc:MGI:3649286]
Coordinates
chr2:67491044-67492400:-
Coord C1 exon
chr2:67492328-67492400
Coord A exon
chr2:67491984-67492111
Coord C2 exon
chr2:67491044-67491078
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTCCCCGCCCCATTTAACAGTAG
3' ss Score
6.07
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTCTATAGAAACAGAAACCCACAATACCATTAAGAACCAAAGATGCTGTATCTGGGACACACCAAAAATTAAG
Seq A exon
TAGAGGAATTGTTGCAGAATGGATGTTCACACAGATGGCGCTATTTTACCAGGAAGATGTAGTCCATAAAAGACTCAGGCCAATGTTCTGCACAGTGCAGGTGGAGCTGAGATGCCCTGTATAATGAG
Seq C2 exon
AATAGAATGACCGAGAAAGCCAGGCATGCAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087467_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATAGAAACAGAAACCCACAAT
R:
CTGCTGCATGCCTGGCTTTC
Band lengths:
107-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types