MmuEX0020963 @ mm9
Exon Skipping
Gene
ENSMUSG00000064263 | Gm1631
Description
predicted gene 1631 [Source:MGI Symbol;Acc:MGI:2686477]
Coordinates
chr2:71557474-71568490:+
Coord C1 exon
chr2:71557474-71557565
Coord A exon
chr2:71561347-71561553
Coord C2 exon
chr2:71568407-71568490
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTGTTGACCAGAAGCAG
3' ss Score
-2.1
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
TTTCAGAGATGCAGTGACTCTGCCAGATGCTTCAGTGTCTCCCAGGAGGCAGGTTTTGCAGTGCATGGAGAGGAACCAGCTGGCAGAGAAAG
Seq A exon
CAGGTTCAAGCTCAAGCAGCAATCAGATCATGTAGAATGACCACAGCCAAATGCACAAGCCCATTTGAGAAGCAAGGGAATGTCTTGTGTGATCCCAGAATCCCAGGTCCCGGGAAGACAGAAATGTTGCTGAGACCCCGTGGCAGCTTGGGTTCAAGCAAGACAAAGCTGCAGCCAACAGGGCTGCCATCTTCTCACTCTCTAAAG
Seq C2 exon
GAATGTGAGAGGGTGACCACCCTACAACCCAGGGAAATGGGTTCTTGTTCTAGCCTGGTGTTGGAGAATCACTCTCTGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064263-'0-5,'0-1,1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.543 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGACTCTGCCAGATGCTT
R:
AGAGTGATTCTCCAACACCAGG
Band lengths:
156-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: