MmuEX0020974 @ mm9
Exon Skipping
Gene
ENSMUSG00000090038 | Gm16573
Description
predicted gene 16573 [Source:MGI Symbol;Acc:MGI:4414993]
Coordinates
chr14:57229625-57232618:-
Coord C1 exon
chr14:57232522-57232618
Coord A exon
chr14:57230510-57230576
Coord C2 exon
chr14:57229625-57230174
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCAACCAAACTCCAGGTT
3' ss Score
5.85
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGTGCTACAGTGCCAGGGATGAAGAAGATGGCCACAGGACTCTGGATGCTGAGTTCCGTGATGTAGGTGATTTTGATGAGGACTTTAGCCCGAGGGG
Seq A exon
GTTTCTGAAAGACCTTACAGGGATGCCTTCTGTGTTACGGCTTGGTGAAAGGTGGACATACTGATAG
Seq C2 exon
ACCCTGTTGACTGACCTGAGGACCGGGCCATGACTGGAGCATGGGAAAAAGACATTTTACAGAGGGATACTGTCTACTCCCAATGTGTGTGTTCTCTTATCAGTCTGGCAGTCGAGTGCCTGGTGGCAGTACCAGTTCTTCTGCTTCACACAACAGCGACTTCATTTCCTCCTTTAGACAACGCACGTGGGTATGACTGGCTTGACCTCCTGTACTCCTAAGGGGTTTTCATTTGTGTGTTTGAGACAAAGTCTTGCTAGGAAGCTCTGACAGGCTAGAGCTCACAGTGTAGAACAACAGGTGAGCCTTGAACTTGCAGCAATTCTCCTGCCTCTACCTCTCAAGGGCTGAGATTATGGTATATGCCACCACGTGTGACATTTAAGAGAAATCTCATAAGCTCAGAGTACTGTAAATAATCTTGGCTTCTATTATGGATTCATATTGCAAATCATTTCCCATAATGCATGGGCTACAGAATGAGTGACAAGCTGTACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090038_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGACTTTAGCCCGAGGG
R:
TCGCTGTTGTGTGAAGCAGAA
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: