MmuEX0021092 @ mm9
Exon Skipping
Gene
ENSMUSG00000066647 | Gm5113
Description
predicted gene 5113 [Source:MGI Symbol;Acc:MGI:3644651]
Coordinates
chr7:30960870-30965228:+
Coord C1 exon
chr7:30960870-30960965
Coord A exon
chr7:30961337-30961477
Coord C2 exon
chr7:30962663-30965228
Length
141 bp
Sequences
Splice sites
3' ss Seq
TACATGCCTGGTTCCCCAAGGAG
3' ss Score
3.69
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
GACTTGTCATTTTTAAGCCTGATGTCGTCTTCTTATTGGAGCAAGGGAAAGAGCCATGGACGGTTACAAATTATATGACAAATCCTTGGCACCCAG
Seq A exon
GAGGCCAGAAGAGGGCATTGGATTCCTTGGAACTGGAGTTGCAGATGGTTGTGAGCCACCATGTGGGTACAGAGAACTGAATCCGGGTCCTTTGGAAGAGCAGCCAGGGCTCTTGACCAGTGAGCCACCTTGTACATGGAT
Seq C2 exon
ACTTGAAGACAAAGTGTGAGAGAGTTCCCAGGAAAGGGCTCTTTGAATAGAGTCATTCAAATGGGAGGTAACGGGAAGCTAGCAGCACCGTGACTTTCAGGACCCTCACCTCACAGATGCCTGGGCGTGCAGAGACCGCTGTGAGAGACAGCGCACAAGTCAGGAGTGTCATTTCAAGCAAGTGGAAACCCCTGGAAAAGTGTCCCTGCTCTCCAGCGTCACACACGGCATGGGAGCGGCAGGACTGCAGTAGAGAAAGTGACCTGACCGGATGCAGTGAGCTCGAGGAAGCAGGGAAGCGTTTAGCTGTGGCTTGAGCCTTACTCAGCACCTCAGCAGTTGAAAAGCCCTTTGAGTGTAAGGGGTATGGGAGAGCTTTTGCTCAGGCCTCACACCTTGTCCAGCATCAGAGAATCCATTCAGATGAGAAGCTCTATGGGTGCTGGGCGTGTGGCCATCCTTCAGACCTCAGTCTCCATCAGAGACTTCCTGCTAGCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066647-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGAAAGAGCCATGGACG
R:
TTTCCAGGGGTTTCCACTTGC
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: