MmuEX0021201 @ mm9
Exon Skipping
Gene
ENSMUSG00000073405 | Gm8815
Description
RIKEN cDNA C920025E04 gene [Source:MGI Symbol;Acc:MGI:2442805]
Coordinates
chr17:36246796-36247888:-
Coord C1 exon
chr17:36247613-36247888
Coord A exon
chr17:36247218-36247326
Coord C2 exon
chr17:36246796-36247080
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTGGCTCTCACCCAGCTC
3' ss Score
4.55
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
AATCTCACACGCTGCAGTGGATGTACGGCTGCGACGTGGGGCCCGATGGGCGCCTGCTCCGCGGGTATTGTCAGGAGGCCTATGATGGCCAGGATTACATCTCCCTGAACGAAGACCTGCGCTCCTGGACCGCGACCAACTTAGCCTCGCATATCTCTAAGTGCAAGTCAGAGGCGGTCGATGAGGCCCACCAACAGAGGGCATACCTGCAAGGTCCTTGCGTGGAGTGGCTCCATACATACCTACAGCTGGGAAGTGAGACACTGCTGCGCTCAG
Seq A exon
CTCAGGACCAGAAGCCCTTCCCACGATCTGCAGAGACCTGGAACCTCCTGTCCATGTTGTCCTGCTCACATCCTAAGGCATCCCTAAGAACAGATCCTCCCAGGTGCAG
Seq C2 exon
ACCCTCCAAAGGCACATGTGACCCGTCACCCCAGACCTGAAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTATCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGTTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGGGTAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073405-'3-4,'3-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=50%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.324 C2=0.267
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGTGCAAGTCAGAGGCGG
R:
TCAGCTCCTCCCCATTCAACT
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: