MmuEX0021494 @ mm10
Exon Skipping
Gene
ENSMUSG00000014959 | Gorasp2
Description
golgi reassembly stacking protein 2 [Source:MGI Symbol;Acc:MGI:2135962]
Coordinates
chr2:70661576-70676545:+
Coord C1 exon
chr2:70661576-70661760
Coord A exon
chr2:70672565-70672761
Coord C2 exon
chr2:70676465-70676545
Length
197 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTTCTCTTTTTCAGGTA
3' ss Score
13.34
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTGCGGCCCGGCTCGGGCTGCTGCAAGTGCCACGTCCCAAGAGCTACGCGGAGTCGCCAAGCGGGCGGTGCGCGAGGCGGAGCAGCGCTGAGCCGGCCGGGTCGTACGGATCGCCCGCCGCCATGGGCTCCTCGCAGAGCGTCGAGATCCCGGGCGGCGGCACCGAGGGCTACCACGTTTTGCGG
Seq A exon
GTAGAGGAAAATTGCCTTAGGCCATTACATTAAGAGTCCCTGTAATGCATGGCTTGGTGAATTTTTACAAACAGTCCTTGAACAGCAGCCTCCTTCCAGTCGCACCCCACCCACTCCTATCCCTCCCAAGTGTGAATTCTGTCTGCTACACTGGTTTGTAGCAATGGCAATTAGTTGGCCTATTCTTGGAATTTATG
Seq C2 exon
GTACAGGAAAACTCCCCAGGACACAGAGCTGGACTGGAGCCTTTCTTTGATTTTATTGTTTCTATTAACGGTTCAAGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014959_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.657 A=0.091 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGCTGCTGCAAGTG
R:
AACAATAAAATCAAAGAAAGGCTCCA
Band lengths:
234-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types