MmuEX0021679 @ mm10
Exon Skipping
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73382795-73386572:-
Coord C1 exon
chr2:73386265-73386572
Coord A exon
chr2:73384068-73384192
Coord C2 exon
chr2:73382795-73382958
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTCCTTACTCCCTTTCTAAGGAC
3' ss Score
7.85
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATGTCCTGAGCTTGGGGGCGGGGCCTCACGGCAGAATGGAGACCGGCTTCTCTGACCTCCAGGCCAGGGGCGGAGCCTGAAGGCGGGGCGGAGGCGGGGAGGAGGCACCGGGCTGCAGACGCCTAAGGTAGCTGACAGGACCGCAGCGGCTCACCCCTCCCTTTCTCGGAACGTGGTTGGGCATCTGCCGCTGGCACACGCCGCTACAAGAGGGTTCGGGGCGGGAGATGACGGCGGTGTGCTCGCTGCTTGGCCCTCTGTGAGCATCGGCTTCCTTCTCCTTGCAGCCGGAGCTGCAGACCTAGCAG
Seq A exon
GACACATTTCTTAAGGGCGCCAATGTTTTCATACTCAAGTCTGATTGTTGACCAGCAACTTCAAGGATGACTGTGTGCCAACCAGAACCTGCCTGTGTAATTCAGTGCTTATTTGGAAAGATCAA
Seq C2 exon
GGCTTCCTCATACTCCACCAAAAGTTATATTCAGCTTGGATAAGTGATTACTATGTGCCGGCTGTGATTAGACTGCAAGGACTCTACTTGAAGTAGACATTGATATTGGCACCTCACAGATGATAAGGTGAAGCACAAAAACTCAAGTTTGGGGTTCCAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGTAGCTGACAGGACCGC
R:
GTCTAATCACAGCCGGCACAT
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types