MmuEX0022195 @ mm9
Exon Skipping
Gene
ENSMUSG00000022487 | Gtsf1
Description
gametocyte specific factor 1 [Source:MGI Symbol;Acc:MGI:1921424]
Coordinates
chr15:103258771-103260901:-
Coord C1 exon
chr15:103260787-103260901
Coord A exon
chr15:103260290-103260425
Coord C2 exon
chr15:103258771-103258815
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCAATTCACCGACAGCCT
3' ss Score
6.22
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
Exon sequences
Seq C1 exon
GCGCAAGCCACAGTCACAGGAAGTGCGGCCACGCCCTGGCATCAGGCCGGAAGTGGGCGTTGCCGGGGCCTGGCTGTGAGGCGAAGTCGGCGGTGGGGAGAGCTTCTGGACTGAG
Seq A exon
CCTGTTATTGGGGGAAAGGAATCAAATCACCTGTTAACAATTTGATGGGGAAGATAAGAGACAGCTGAATGATGGTGTTATGAGTTCCAGCGTCCTTGGCCTACTTGGAATCAGTCTGTTTGCTAAGAAAGAATAG
Seq C2 exon
CACTTGAACAGGACTCCTTTGCCATCAGCATGGAAGACACTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022487_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.252
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCACAGTCACAGGAAGT
R:
TGTAAGTGTCTTCCATGCTGATG
Band lengths:
157-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: