MmuEX0022266 @ mm9
Exon Skipping
Gene
ENSMUSG00000073406 | H2-Bl
Description
histocompatibility 2, blastocyst [Source:MGI Symbol;Acc:MGI:892004]
Coordinates
chr17:36218187-36220910:-
Coord C1 exon
chr17:36220641-36220910
Coord A exon
chr17:36220178-36220453
Coord C2 exon
chr17:36218187-36218462
Length
276 bp
Sequences
Splice sites
3' ss Seq
CTGACCGTGGGATCCTGCAGGCT
3' ss Score
5.53
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GCCCACACTCGATGCGATATTTCGAGACCGCAGTGTTCCGGCCCGGCCTCGGGGAGCCCCGGTTCATCTCTGTCGGCTACGTGGACAACACGCAGTTCGTGAGCTTCGACAGCGATGCGGAGAATCCGAGATCTGAGCCGCGGGCGCCGTGGATGGAACAGGAGGGACCGGAGTATTGGGAGCGGGAAACACAGATCGCCAAGGACAATGAGCAGAGTTTCGGATGGAGCCTGAGGAACCTGATCCACTACTACAACCAGAGCAAGGGCG
Seq A exon
GCTTTCACACATTCCAGCGGTTGTCTGGCTGTGACATGGGGTTGGACGGGCGCCTCCTCCGCGGGTACCTGCAGTTCGCTTATGATGGCCGCGATTACATCACCCTGAACGAAGACCTGAAAACGTGGATGGCGGCGGATCTGGTAGCGCTGATCACCCGACGCAAGTGGGAGCAGGCTGGTGCTGCAGAGCTATACAAGTTCTACCTGGAGGCCGAGTGCGTGGAGTGGCTCCGCAGATACCTGCAGCTCGGGAAGGAGACGCTGCTGCGCACAG
Seq C2 exon
ATCCCCCAAAGGCACATGTGACCCATCATCCCAGACCTGCAGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACTCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCTAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073406-'1-4,'1-3,2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9),PF0110318=Bac_surface_Ag=PU(54.5=93.4)
A:
PF0012913=MHC_I=PD(49.4=94.6),PF0110318=Bac_surface_Ag=PD(44.9=75.3)
C2:
PF0012913=MHC_I=PD(6.2=6.5),PF0765410=C1-set=WD(100=89.2)
Other Inclusion Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGGGACCGGAGTATTG
R:
AGCTGCCCACTTCTAGAAGGT
Band lengths:
304-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: