MmuEX0022282 @ mm9
Exon Skipping
Gene
ENSMUSG00000024459 | H2-M5
Description
histocompatibility 2, M region locus 5 [Source:MGI Symbol;Acc:MGI:95917]
Coordinates
chr17:37124600-37126482:-
Coord C1 exon
chr17:37125450-37126482
Coord A exon
chr17:37125195-37125332
Coord C2 exon
chr17:37124600-37124875
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTGCATCTGAAGAAG
3' ss Score
4.79
5' ss Seq
TTTGTAAGC
5' ss Score
3.93
Exon sequences
Seq C1 exon
AAGGTCATTGAGAAGATTGCCCTAGTGAATTTGCAGGAGGCCATGGACATCTACAACCACAGCAAGGATGGTGAGTAACCCTTTCACATCCCTTACGGACGGACGACCCTGAGTTCCCGGGTCCTCAGCTCCCGAGGTTTGGCCCCCAAGGTTGCCAGACTTGAGGAGACCCTGAACCGGTTTCGTGCAAGGTTGTGGTCCAAATACGACCGGGGCGGGGCCAGGCTCTCACGTCTTTCAGTGTGTGTATGGCTGCGAAGTGGGGCCAGATGGACTCTTCCTCCGTGGGCATGAGAAGCACGCATACGACGGCCGCGATTACCTCACCCTAAGCCCGGACCTGCACTCCTGGGTCGCAGGCGACACAGCTGCGCAGATCACGCTGCGCAGGTGGGAGAAGTCTGGTGTCTCTGAGCAAAGGCAATCCTTCTTGAAGGGCGAGTGTGTGGAGTCGCTCCGCACATACCTGGAGATAGGGAAGGAGACTCTGCTAAGAACAG
Seq A exon
AAGGAAGAGAGTTCTGGTTTTCCCGATCAAACACTAGACAGAGACTCTTGCGACTTTTTCTCGGGAGAGTTGAGATTGTCTCAGGAAGGAAAGAGAGAAGATCCCTAAACAGCTGCCCCTTTCAGTCTGCAGCCCTTT
Seq C2 exon
ATCCTCCCAAGGCACATGTGACCCATCACCCCAGACCTGAAGGTGAAGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTAACATCATCCTGACCTGGCAGTGGGATGAGGAAGACCTGACTCAGGACATGGACCTCATTGAGACCAGACCTGCAGGGGATGGGACCTTCCAGAAGTGGGCATCTGTGGTGGTACCTTCTGGAGAGGAACAGAGATACACATGTCATGTGCAACATGAGGGGCTAACCCAGCCCCTTGTTCTAAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024459-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.124
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
NO
C2:
PF0012913=MHC_I=PD(15.6=7.6),PF0765410=C1-set=WD(100=92.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCCTTCTTGAAGGGCGA
R:
CCTGCAGGTCTGGTCTCAATG
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: