MmuEX0022286 @ mm9
Exon Skipping
Gene
ENSMUSG00000067235 | H2-Q10
Description
histocompatibility 2, Q region locus 10 [Source:MGI Symbol;Acc:MGI:95929]
Coordinates
chr17:35607321-35610303:+
Coord C1 exon
chr17:35607321-35607590
Coord A exon
chr17:35607771-35608046
Coord C2 exon
chr17:35610028-35610303
Length
276 bp
Sequences
Splice sites
3' ss Seq
CTGACTGCAGGATCCCGCAGGCT
3' ss Score
1.49
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GCTCACACTCCATGAGGTATTTCGAAACCTCCGTTTCCCGGCCGGGCCTTGGGGAGCCCCGGTTCATTATTGTCGGTTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGACGCGGAGACTCCGAGGATGGAGCCGCGGGCGCCTTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGAGAGCCAAGGGCAATGAGCAGAGTTTCCATGTGAGCCTGAGGACCCTGCTCGGCTACTACAACCAGAGCGAGAGCG
Seq A exon
GCTCTCACACGATCCAGTGGATGTATGGCTGTAAAGTGGGGTCCGACGGGCGCTTCCTCCGCGGGTACCTGCAATACGCATACGACGGCCGCGATTACATTGCCCTGAACGAAGACCTGAAAACGTGGACGGCAGCGGACGTGGCGGCGATTATCACCCGACGCAAGTGGGAGCAGGCTGGTGCTGCAGAGTATTACAGGGCCTACCTGGAGGCCGAGTGCGTGGAGTGGCTCCTCAGATACCTGGAGCTCGGGAAGGAGACGCTGCTGCGCACAG
Seq C2 exon
ATCCCCCAAAGACACATGTGACCCATCACCCAGGATCTGAAGGTGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAACTGGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067235_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.011 C2=0.226
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9)
A:
PF0012913=MHC_I=PD(49.2=94.6)
C2:
PF0765410=C1-set=WD(100=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATTGGGAGCGGGAGACA
R:
CAAGAGGCACCACCACAGATG
Band lengths:
307-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: