MmuEX0022367 @ mm9
Exon Skipping
Gene
ENSMUSG00000030606 | Hapln3
Description
hyaluronan and proteoglycan link protein 3 [Source:MGI Symbol;Acc:MGI:1914916]
Coordinates
chr7:86266533-86268437:-
Coord C1 exon
chr7:86268256-86268437
Coord A exon
chr7:86267285-86267378
Coord C2 exon
chr7:86266533-86266901
Length
94 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTCTTGTGCTCTAGGCA
3' ss Score
9.61
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
TTTTCCCAGGGCCCAGCCTCGTCTAAGAGACCCTGGCACTGCCACCATCCTGGCCGGGATGAGCCTGCTGTTCCTTGTCCTTCTCTCGCCATTTCCCTGCGTTTTGGGACTTCCATTCTACAATGGCTTCTACTATTCCAATGATCTGAGTGGCAGGACCCTGGGAAATGGCTACGGGGAAG
Seq A exon
GCAGGCAAGTCTGGGCTTGTACTCTTAAGAGACTGGCATTAAACGACCACAGAGAAGGTGGAGTCAACAAGGGCTCCTGGACCCAAGCCTCAGG
Seq C2 exon
GCCTATTCAATGGCGTGAAGTTAGTGGTGGAGACGACGGAGGAGTCCCTGTTCAGTCACCAAGGAGCCAGCGTGACCCTGCCCTGCCACTACCACTATGAGCCAGCCCTGGCATCCCCAAGACATGTGCGTGTTAAGTGGTGGAAGTTGTCAGAGAATGGAGCCCCAGAACAGGACGTGCTGGTGGTCATCGGGCAGAGGCACCGCTCCTTTGGGGACTACCAAGGGCGAGTTCAACTGAGACAGGACAAGCAGCAGGAAGTCTCGCTGGAGCTTCGAGACCTGCGGCTGGAGGACTCTGGGCGCTACCGCTGCGAGGTCATCGATGGCCTGGAAGATGAGAGTGGCCTGGTAGAGCTGGAGCTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030606_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0768612=V-set=WD(100=92.7),PF0019312=Xlink=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTGTCCTTCTCTCGCCA
R:
GGTGACTGAACAGGGACTCCT
Band lengths:
172-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types