MmuEX0022955 @ mm9
Exon Skipping
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:13786389-13846302:+
Coord C1 exon
chr10:13786389-13786490
Coord A exon
chr10:13830471-13830592
Coord C2 exon
chr10:13846258-13846302
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCTGCCTACCTCAGTAC
3' ss Score
6.22
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGAAGTCTGTGAGTTTTGTCAAAGCCAACGATAATCAGACCTACTTGAAAGATTAAGTGAATTGATTTCATTGGAACATTCTCTCAACAGCCAGCCAGTAG
Seq A exon
TACTTTCGACATGTGGCATTGCCTAACTAGCTCGGTGTTTTCCTAATGAGCTTTGAAGTCTCCACTGCTTTGCTGCGTCTTTTTATGCTCCCTCGGAATACTGCACAGAAAGCTTCTTGAAG
Seq C2 exon
GAAGCGTCAGGACAATCATGCCCATGAGAACTCTCAACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501_MULTIEX1-3/11=2-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTGAGTTTTGTCAAAGCCA
R:
AGAGTTCTCATGGGCATGATTGT
Band lengths:
132-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: