MmuEX0022960 @ mm10
Exon Skipping
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119733784-119814790:+
Coord C1 exon
chr4:119733784-119733862
Coord A exon
chr4:119741796-119741915
Coord C2 exon
chr4:119814678-119814790
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATTGTATATCTGCATGCAGACT
3' ss Score
5.9
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTGGGGCTGTCAGTCGGCGCCCGCCGCCGCGGCTGCTCGCACGCCGGGCCTCTGGAGCAACCTCAGCGGAGCGCGCAG
Seq A exon
ACTTTGGTTTGGCCAGCCTTGAAGGACAAAGAACTCAGGAGTCAAAGGACACGGTTTGCCCAACGTAGAGAGAATCACAAGTAGACAGGCTGCCTCGGAGTGGAACTCCTGCGGACACAG
Seq C2 exon
GTGTTTATGAAAAAAAATGCACAATATCCCGACTGACCGGAATAATTGAAGAAGGGTGCTGGATCCGTGGGTCAGAGAACACACAGGACCAGCTTGCTACCCCAAGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634_MULTIEX1-1/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCTGTCAGTCGG
R:
CTTCAGCCTTGGGGTAGCAAG
Band lengths:
192-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types