MmuEX0023584 @ mm9
Exon Skipping
Gene
ENSMUSG00000030541 | Idh2
Description
isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:MGI Symbol;Acc:MGI:96414]
Coordinates
chr7:87240909-87242841:-
Coord C1 exon
chr7:87242690-87242841
Coord A exon
chr7:87242058-87242096
Coord C2 exon
chr7:87240909-87241021
Length
39 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCTGTCTACCCAGCGC
3' ss Score
7.58
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCACTATAAGACTGACTTCGACAAGAATAAGATCTGGTATGAACATCGGCTCATCGACGACATGGTGGCCCAGGTGCTCAAGTCTTCCGGTGGCTTTGTGTGGGCTTGCAAAAACTATGATGGAGACGTGCAGTCTGACATCCTGGCTCAAG
Seq A exon
CGCTACTGGGGATTATATATACGGCCTCATGAAAGCTAG
Seq C2 exon
GCTTTGGCTCCCTCGGCCTGATGACATCTGTGCTGGTCTGCCCTGATGGGAAGACAATTGAGGCTGAGGCTGCTCATGGGACAGTCACCCGCCATTACCGAGAACACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030541_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(12.8=100)
A:
PF0018015=Iso_dh=PD(3.1=81.8)
C2:
PF0018015=Iso_dh=FE(9.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTTCCGGTGGCTTTGTG
R:
GCAGACCAGCACAGATGTCAT
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: