MmuEX0024683 @ mm10
Exon Skipping
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60674647-60722643:-
Coord C1 exon
chr2:60722416-60722643
Coord A exon
chr2:60676040-60676128
Coord C2 exon
chr2:60674647-60674728
Length
89 bp
Sequences
Splice sites
3' ss Seq
CATTTCATTTATTTTCCTAGCAT
3' ss Score
6
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
AGCAGTATCTTTGCCTAGCGGTGTACACCCACATGCCTTTATGAAATGCCTCATTATGCCGGTGGAAGAAATAGTCCCATGAATGTGCTTTTTCAGGGATGGTGACAACAGAATGTTTTAAGTCTATTCACTACCACAAGGATCAATGGCACTTCTGCCAAAGACTTTGCTCACGGGTACAGTAACGCATGTCAGCACTTTCTGAGATTAGAGGGTCTCCCGTGCGAG
Seq A exon
CATAACCTCTGCTTCAAGAATAATACCTGGGGCTGGAGACAGAGACAGCTCAGGAGTTGAGAGCATTTGCTGTTCTTGCAGAGGACTTG
Seq C2 exon
GTTTCTCACGCTTGCCTGGAAACATACCTTCAAAAGACAGTCTCCCAGGACGTGAGCCCAGACAGAAAGGAGCCTGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTTTTTCAGGGATGGTGA
R:
AGGTATGTTTCCAGGCAAGCG
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types