MmuEX0025202 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29498429-29499036:-
Coord C1 exon
chr6:29498957-29499036
Coord A exon
chr6:29498787-29498880
Coord C2 exon
chr6:29498429-29498514
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGACTGGGCCCTGTTAGCAGAAT
3' ss Score
3.82
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCCCGTGGGCTCCCAGGACCCCTGCTCTAGCTGCCGCTGTACC
Seq A exon
AATGGGAGTGTCCAGTGTGAGCCTCTGCCCTGCCCGCCTGCACCCTGCAGATACCCGGGCAGGATCCCTGGGCAGTGCTGCCCTGTCTGTGATG
Seq C2 exon
GCTGTAAATACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'13-26,'13-23,14-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(44.6=92.6)
A:
PF0009313=VWC=PD(51.8=90.6)
C2:
PF0009313=VWC=PU(49.1=93.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCTAAATGGGCGGGAG
R:
CTGGCAGACGCACCGAAG
Band lengths:
164-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types