MmuEX0025274 @ mm9
Exon Skipping
Gene
ENSMUSG00000054611 | Kdm2a
Description
lysine (K)-specific demethylase 2A [Source:MGI Symbol;Acc:MGI:1354736]
Coordinates
chr19:4394792-4398266:-
Coord C1 exon
chr19:4397934-4398266
Coord A exon
chr19:4396311-4396825
Coord C2 exon
chr19:4394792-4394892
Length
515 bp
Sequences
Splice sites
3' ss Seq
GCTGGGGGTGTACGGGGGATCGT
3' ss Score
-21.68
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
CTGAGCGTGGCCAACAGCAGGGGCTCCCTGGGCCACCTCCCTGGGAGCCTGCGGCCCGCAGTGGGGTGTGCTAGCTGCTGCCACCCCTGAGCCGTCGTGGATCCCACTGTCGCGCACAGCACCTGTGGACTCCCTTGTCAAGCGTCTGGAGCTGCCCTGAGGGAACAGAGCTCGGGACAGACATGCTACTGCTACCGGTTCCTGCCCCTTCGGAGCGGCGAGGAGTGGGTGAGGCGAAACCGGTTCGCTGCACGGACAGGAGCTCCCCCCGTGCTAAGGGCGGCCAGGCCCTGCAGCGGGGGGCGCAGGGGCCTACTCCGGGATGGCGAGCAG
Seq A exon
CGTCCCGCAGCGCGGAGCCCCGGCTCAGGGGACGACGCAAAGGCAGCCGAAGGCCCCCGGTCAGGGCGCTTCGCTGCTCCCGCCCTCTCCGCCCCCCGGGGCCGGGGCCCGCGTTCCGGGGGGCCGGGCGGCGCGGGGAGCGTCGGCCGGGCGGGTCTCAGCTGATCGGCCGCGGTTCCTGGGCTTCGGTAGCGGCTGTGGCCGGCTGAGGGTACCGAGAGGAGGGTGTTTCCCGCGGCCCGGTTGACCCGGGTCTCGGGCTGGGGCTGCTGACCGCCAGCTTGGGGGAGTAGCCGAGTGGTCTTGCTTCCCTGACGCCTCGGACGCGGAGTCTGTAAAAGCCAGAAGAGGAGGTTTGATTCAGTAACTGTTTCCTCTTTTCCGGGTCGCTCTGACCCTTCTCTGGATACTGGGTTAATACACAGAAATACCGAAGACGACGTTTGGGATTTTATTTTGTCTGTGTTTGGAATTTTACTTCTCTCTTGGACAAGAACTCAAGAACAAAATCCTCG
Seq C2 exon
GAAGAGGAAGGCATCCCTGGAGTGGTTTCTTTACTGTACTTCCATCAGAAGAGTGAGAGATGGAACCTGAAGAAGAAAGGATTCGGTACAGCCAGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054611_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.900
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTGGCCAACAGCAG
R:
TCCAGGGATGCCTTCCTCTTC
Band lengths:
352-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types