MmuEX0026168 @ mm10
Exon Skipping
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99739602-99745946:-
Coord C1 exon
chr15:99745889-99745946
Coord A exon
chr15:99741609-99741659
Coord C2 exon
chr15:99739602-99739730
Length
51 bp
Sequences
Splice sites
3' ss Seq
GGATTATGTTTTTTTCTTAGATG
3' ss Score
7.6
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAGATTCACTTATTATTTATGTATCTTCTGCTACGGAATCAGATTTCTCTGGTCG
Seq A exon
ATGCCTTGGTTCTGGGATACCCGACAGTGCTGGTACAACTATCCGTATCAG
Seq C2 exon
GACTTCCTGATGATGTTTATTCATCATATGATTGGCATTATGCTCACCACTTTCTCCTACGTCAACAACATGGTGCGAGTGGGAGCACTCATCTTCTGTCTGCATGACTTCGCAGACCCCTTACTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021_MULTIEX1-3/5=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PU(15.7=80.0)
A:
PF0379811=TRAM_LAG1_CLN8=FE(10.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTACGGAATCAGATTTCTCT
R:
GCAGACAGAAGATGAGTGCTCC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types