Special

MmuEX0027915 @ mm9

Exon Skipping

Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105258263-105270128:-
Coord C1 exon
chr11:105269957-105270128
Coord A exon
chr11:105263184-105263514
Coord C2 exon
chr11:105258263-105258409
Length
331 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTCTTTCGTGCAGGTG
3' ss Score
11.22
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGTTCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAG
Seq A exon
GTGACAGCAGCGAGCAGCCCCTGTTCTGTGTTGAATATTCCCCTTACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGCCCTTAGTTCCACCAGCTGCCCAGGGGGCCCAGAGCCCTTCCACTTCCCTCCCTCCCGCCATCTTTCCCACCTTCTCCACCCCGCCCTCAAGCCCCCTGAGCCCCTTGCTGGGGTCTCCAGCATCTCTCTGCTACTTCCCTGTCTCCCAACCGACTCCAGCCGAGACCCCTGTGCTGTGTCTACCAGGCCCCAGAAGGCCCAGTAAAATTTACCTCATATG
Seq C2 exon
TGGCACCAAAGATTTTATCAAGGAAGAGGAGACCAAACCTGGGGAGATTGACAGTCAGCCCAGAGATGCACAGCCCAAGAGCATCTGCGGAGAGAAGCAGGCAGAAACCACAGCTGTCGACAAAGGCATCAGGACTCCTGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.945 A=0.218 C2=0.940
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000118401





     
                   









    
Main Skipping Isoform:
ENSMUSP00000063198





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000097906
          









    
Other Skipping Isoforms:
ENSMUSP00000121919
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:60827564-60827897 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:47799138-47799471 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTGAGGAGGATTCTCGCAGT

				
R: 
GGAGTCCTGATGCCTTTGTCG

				
Band lengths: 
304-635

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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