MmuEX0027929 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60209887-60229082:+
Coord C1 exon
chr2:60209887-60210084
Coord A exon
chr2:60224770-60224870
Coord C2 exon
chr2:60228918-60229082
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTATATGTTTCAGGTC
3' ss Score
12.04
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGGAGGAGGAAGGGCGGGGCTGCCAACGGCGGCGGCCACTTCTGCGGCGCATCCGGAGGGGCGGCCGCCATTGTGCTTCGTCGCCGACTTCTCTGCCGGTAGCCCGAGAGCCGAGCCGAGCCCAGCGAGGAAGGCGGCGGCGGTGTGGCTGCGGCGAGCGCGACACTCCCTGCAGCGGAGTGCTCGGTGGAAGAGG
Seq A exon
GTCAGGGCTGCATCATTTATTGGATTGGTGTTTTTGATAAACCTATATGCTTGGTGTTTCTGATATGATTTGATATGTTCATGTATCCCTGATTTATTTTG
Seq C2 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGCACTAGGATGGTGTCTGGAAACAGAGGAACCAGTTTAAATGATTCATATCATTCTAGAGACTCCTCCTTTAGACTGGATTCTGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.922
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCTGCGGCGCATCC
R:
TCCAGACACCATCCTAGTGCT
Band lengths:
253-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types