MmuEX0028078 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49134101-49154249:+
Coord C1 exon
chr2:49134101-49135303
Coord A exon
chr2:49135405-49135496
Coord C2 exon
chr2:49154176-49154249
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGATTTGATTTTAAGATT
3' ss Score
5.43
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AAGGTGATAAGATTCTGGAGGAAAATTTCAGGTATAATAATTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAACGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTTCTAGAGGGGCAGTCTCCGGGTTCTTCAAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAACCATTAATGGGTGTGTGCCTAGTCCCTCAGATGCTAAAAGCATTAGTAGTGAAGACGACCTACGGAATCCAGACTCCCCCTCCTCACATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGGAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
Seq A exon
ATTCTTCATGACTCATTGAGGTCTCACAAGCTTCTGGAACATAAAATGAAGAGGGGATGGTTATAGTCACCAAAGTGTCATATTGCCAAGGG
Seq C2 exon
GTGGAGCCCGAGAAGTTGAAGACTCTCACAGAAGGTTTAGAAGCCTACAGCCGCGTCCGGAAAAGGAGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'34-39,'34-38,35-39
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.143 C2=0.851
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.5)
A:
PF0085512=PWWP=PD(18.4=40.9)
C2:
PF0085512=PWWP=FE(29.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCTCCTCACATGAGTT
R:
CTTCAACTTCTCGGGCTCCAC
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: