MmuEX0028274 @ mm9
Exon Skipping
Gene
ENSMUSG00000039842 | Mcph1
Description
microcephaly, primary autosomal recessive 1 [Source:MGI Symbol;Acc:MGI:2443308]
Coordinates
chr8:18641565-18668983:+
Coord C1 exon
chr8:18641565-18641665
Coord A exon
chr8:18646650-18646754
Coord C2 exon
chr8:18668946-18668983
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATAGCTGTTCCCCTCCTAGGCA
3' ss Score
8.56
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGTTAAAAATGGACCAGGGCGGCCAGATCCTTCAGACAGCTCTTGCACAGGCCTTGTCAGACCTCAGCAGAAACCAAAGAAAAGTGAGAAAGAAGAAAAG
Seq A exon
GCAGGTGGGTTTGCATCAGTAAGAAGTGGAGTCTCTCCTCAAGGTAGCGTGCTGCAGTACATCACTGGAGTTGACTCCCAATTTAAGTCCTGCTCTTTCCTCCAG
Seq C2 exon
CCAACGAGAACATTGGTCATGACAAGCATGCCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039842-'15-14,'15-11,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=0.200 C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053321=BRCT=PU(10.4=53.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAAAAATGGACCAGGGCGG
R:
TCAGATGGCATGCTTGTCA
Band lengths:
138-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: