MmuEX0028693 @ mm9
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71350183-71353857:+
Coord C1 exon
chr2:71350183-71350225
Coord A exon
chr2:71352681-71353599
Coord C2 exon
chr2:71353694-71353857
Length
919 bp
Sequences
Splice sites
3' ss Seq
GTCTCCGTTTCCTGACTTAGAAG
3' ss Score
6.48
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
AAGCCAGCGATCTCTGTGAAGCCTTTTGGTGTGGTCTTCTTGCTGCCCAGGAGAGCAAGCTCTTCATTGTGTGACAGTGTATGGGTGTGACATTAATTCAGACAGAGCCTAAATAAATAGATCTTCTCATAGTCTCTGCGTTCCACCTTAGGAAGAGGAGAACTGTGAAGATAGCTAGATGAGATAAATTTATGCAAAATAGTAAATGCTACGCCATGTCCAAGGATCAAGTCATCCCGCCTCCTCTGCCTCCTACGTGTTCTCTGCTGTTGCTAATCATTGGACTTTCACGATGAGCCTGAGCTGGTTCAAGAGCGCATGGCACTTCTGCGTCATCAAAGACGGATAAAATTGTCTTTCTGTGGCTTTACCCCTCAGCTTGCTTTGATATGTTCTAATTCTTTAAAAATCCACGCGGAGTGTGTCTGGTTACCATCATGCTTTCTGGAACATTTGATTCGGATTCCACTCTTAGACGGAGAATTTTTATAACGTGTTTCCTTACTGCATCGAGCCACTTCAATTCTTAGCATGAAATTCTCCTGCTCACGTTATAGTGCTGACGTGTCAGTCTTGTTCCTTCTTGTCATTGTGTGTCATTTCTAAGCTGGTAAATAAAAGAGCAGGCAAATCCTCATGACACCGAGGACATGTTTTCCTATGCTAAATACTTAATTTTCTAGACCTACTGTGGTAATTGTAGGTGAATGTATTTAGTAACTAATTTTTCCAAGTGTGGTTTTTGCTTGCTCAGAAATAAACCGTGGGATCAGAACGTTACAATAGCATTGCTAATCCCAAAGCCGAGGGAACCGAGCCGGTCATCTGCGTGTTCTTAGATGTTGCAGAATCACATGGTTTCAGCTTTTACATTTCAGAATGGTGGTTCTTAATTAATATGTGAACTAACTCTGAGAAG
Seq C2 exon
GTCTATTACAATGGCTACCATGGAGACACCTCTGAAACCTTTCTGGTGGGCAATGTGGATGAAAGTGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCGATTGCAGCCTGCAGAGCTGGGGCCCCCTTCTCTGTAATTGGAAACACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(16.1=100)
A:
PF0055719=Peptidase_M24=PD(0.1=0.0)
C2:
PF0055719=Peptidase_M24=FE(23.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCTCTTCAGGATGGAGA
R:
CTGATTGTGTTTCCAATTACAGAGA
Band lengths:
207-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: