MmuEX0028765 @ mm10
Exon Skipping
Gene
ENSMUSG00000041975 | Mettl8
Description
methyltransferase like 8 [Source:MGI Symbol;Acc:MGI:2385142]
Coordinates
chr2:70967050-70973392:-
Coord C1 exon
chr2:70973253-70973392
Coord A exon
chr2:70971119-70971203
Coord C2 exon
chr2:70967050-70967156
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTTACTCTATGCAGGGG
3' ss Score
9.07
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TCCCACGAGTCCTACAGCGAGGCCCAGTGTTCTGCCTTTATTCATGACGTGTGTGACGACGGCTTAGCCTACCCTTTCCCAGATGGGATCCTGGATGTCGTTCTCCTTGTCTTTGTGCTCTCATCTATCCACCCTGACAG
Seq A exon
GGGCATAAGGACAGCAATCAGCTGAAGACACAAAATAAAGAAAGGGCTGAACATCCTAGCACTTGGATGAGACAGGTGGCTCTCT
Seq C2 exon
GATGCAAGCTGTTGCCCACCGACTGTCCAGGTTGCTGAAGCCCGGAGGAATGCTATTGTTTCGGGATCATGGAAGATACGATAATGCTCAGCTTCGTTTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041975_MULTIEX1-2/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082417=Methyltransf_11=PU(67.7=95.7)
A:
NA
C2:
PF082417=Methyltransf_11=PD(30.8=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGTGTTCTGCCTTTAT
R:
AACAATAGCATTCCTCCGGGC
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types