MmuEX0029504 @ mm10
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:56676522-56678818:+
Coord C1 exon
chr14:56676522-56676618
Coord A exon
chr14:56677058-56677152
Coord C2 exon
chr14:56678564-56678818
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATATGTGTGGTATATGCAGATG
3' ss Score
5.74
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GAGAAAGAGAAAAAAAATGAACCCAAAGGAAAATACCAGAAAAGGTATGATTTGGACAAAGAAGAAAAAGCCAGAAAAGAGCCAAAGGTATTAAAAT
Seq A exon
ATGTGTATGTGCATTTGCCCAGTGCACTCAGAAGGCCGGAGGAGGACATGGGATTCCCTGCTCAGTTACTCTTCACTTAGCCACTGCATCTGAAG
Seq C2 exon
CATTTAAGGAAATCAGAAATGCATTTGATTTATTTAAAAAAACAACAGAAGAAAAAAATGATGTTCTTGAGAATAATTCAAAAAGAGAAGAAATATCACTGGATTCTAAAATTATGAATGATAACAAAACCAAGGACAAGTGTTCACTTAAAGAAAAAAGAAATACTCGAGATGAGACTGACACTTGGGCATACATTGCTGCAGAAGGGGATCAGGAAGTTTCAGACAGTGTATGCCAAACAGATGAGACGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184-'22-11,'22-10,23-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.192 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000116468fB2514
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAAAAGAGCCAAAGGT
R:
AGTGAACACTTGTCCTTGGTT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types