MmuEX0029985 @ mm10
Exon Skipping
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108099119-108100983:+
Coord C1 exon
chr5:108099119-108099186
Coord A exon
chr5:108099654-108099731
Coord C2 exon
chr5:108100813-108100983
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATCTTATATTCTTATATAGACC
3' ss Score
6.46
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
ACCACTCTCCTCCTTTAAGTCCAGCATGTCTACATTTCTTGAAAATATTTTCAAAATGACAAGGAAATTCTTATAAAT
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATCTGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267_MULTIEX2-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGACACACCCAAATCTG
R:
TCCTTCTGGTTCTTTCTCTGCT
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types