MmuEX0030100 @ mm10
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60265205-60277245:+
Coord C1 exon
chr14:60265205-60265361
Coord A exon
chr14:60270359-60270549
Coord C2 exon
chr14:60277129-60277245
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTGCTCTCTCCAGCTT
3' ss Score
9.68
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGCGCAGTGCCACCGGCGGCGGGGGTGGCTGACGCTGCCGGGTTGAGGGAGTTCCTGCGGGTGGCTGTCACCGCCCCGTTTCTCTCCCGATGGTGCTCTCCTGAGGCCAGCTGCCTGCGGGCGTCGCCCCGGGATGGAGCACATCCGGACAACCAAG
Seq A exon
CTTTACTATTAGACAACATGGGCTTCCTCTCTGCGTGCTTCCTCCAGGCTCCATCATCTCCCAACCACGCCTCCACTGTTTCCTTACTCCTCGGTGGTTCCACCTGCCCAGCCGAATTTTCTCTGGGTTGATACTGTCAGTACTACTGCACTTAAAGGCCTGTTTGTGTTCCTTCATCAGATAAAATGCAG
Seq C2 exon
GTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACACACCTATTATTTATTGACGCTCAGCAAAAAGAAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000022563fB2578
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGCTGCCGGGTTGAG
R:
CCAGGTTTCTTTTTGCTGAGCG
Band lengths:
245-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types