MmuEX0033091 @ mm10
Exon Skipping
Gene
ENSMUSG00000047799 | Oog4
Description
oogenesin 4 [Source:MGI Symbol;Acc:MGI:2684051]
Coordinates
chr4:143439892-143450324:-
Coord C1 exon
chr4:143450253-143450324
Coord A exon
chr4:143440657-143440799
Coord C2 exon
chr4:143439892-143440202
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGCTTTTTTTGAGGGC
3' ss Score
-0.71
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GGTCTCTTGGAGCCTGGAGACACAGCCTTCCCCTGCCTGAATATGGCGAGCTGTGAAGAGTGTCCACCTCAA
Seq A exon
GGCCTGGAGAGCTAAGCACAGTCTAGTCATCATCAATCGGCTAACTGAGCCTTTAGGGTTCCTGGTGATCCCTTTCCAGTGGGATATATTCACCCCAACTGTGACTGCAATTGGATGTGGCCTTCGGGAACTAGGATACTTTG
Seq C2 exon
AATGTATCTTTCGAAGAAGACATTGTGAATATCAACCCCCCACCCGCCCTCCAGAACCTGGCAATTCAGAGTCTACTGAGGGATGAGGCCTTGGCCATTTCTGCTCTCAAGAACCTACCCCAGAATCTGTTCCCAGCAATTTTTGAAGCAGCCGTAATTGGTGGACGTATAGAGATCTTGAAGGCCATGATACCTGTATGGCCCTTCCCATACCTTTCTTTAGGAAAGCTGATAAAGAATTGCAACCTGGAGACTTTGAAGGCTATGCTTGAGGGAGTGGATATACTGCTTGCACAAAATGATCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047799_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGAAGAGTGTCCACCT
R:
AGAAAGGTATGGGAAGGGCCA
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types