MmuEX0033092 @ mm10
Exon Skipping
Gene
ENSMUSG00000047799 | Oog4
Description
oogenesin 4 [Source:MGI Symbol;Acc:MGI:2684051]
Coordinates
chr4:143438650-143450324:-
Coord C1 exon
chr4:143450253-143450324
Coord A exon
chr4:143439892-143440202
Coord C2 exon
chr4:143438650-143439234
Length
311 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCTGTTTCCCTAGAAT
3' ss Score
11.18
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTCTCTTGGAGCCTGGAGACACAGCCTTCCCCTGCCTGAATATGGCGAGCTGTGAAGAGTGTCCACCTCAA
Seq A exon
AATGTATCTTTCGAAGAAGACATTGTGAATATCAACCCCCCACCCGCCCTCCAGAACCTGGCAATTCAGAGTCTACTGAGGGATGAGGCCTTGGCCATTTCTGCTCTCAAGAACCTACCCCAGAATCTGTTCCCAGCAATTTTTGAAGCAGCCGTAATTGGTGGACGTATAGAGATCTTGAAGGCCATGATACCTGTATGGCCCTTCCCATACCTTTCTTTAGGAAAGCTGATAAAGAATTGCAACCTGGAGACTTTGAAGGCTATGCTTGAGGGAGTGGATATACTGCTTGCACAAAATGATCGCTCCAG
Seq C2 exon
TAGATGCAAACTCAGAGTGCTCGATTTAAGGAATGAATACCATACTTTGTGGAGAATATGGGGTGGATCCTATGAAGGTAGAGGCTTGCCAGAGTTCATGACACAGCAGCAGCCAATGGAGAACTGTCCTGACTGTGGGGTGAATAAAGAATTGAAGGTGACAACTGACCTCAACCTCGTGGATGGTGGACTTGATGAATCTGCCACATACTTGTTGCAGTGGGCCCAGCAGAAAAAAGATTCCATTCATCTATGCTGTACGATGTTGAGAATTCATAGCTTACCCAAAGACATATTCAGAGATATCCTCAAAATTGTAAATACAGGCTGTATACAGGAGCTTCACTTGAAGGAATTGTACACAGAAGAGTTGGTTTTTCTTATACCTTACCTGAGAGAAATGAACAATCTTCTTACATTCATGCTAAGTAGCATCAGAGAAACCTGCAGAATGGATAACTCGACAAGGCTTGATGAAGAGAATATAAGCAGGTTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047799_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTGGAGCCTGGAGACAC
R:
TGAATTCTCAACATCGTACAGCA
Band lengths:
346-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types