MmuEX0033232 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76406538-76499422:+
Coord C1 exon
chr2:76406538-76406689
Coord A exon
chr2:76407175-76407605
Coord C2 exon
chr2:76499257-76499422
Length
431 bp
Sequences
Splice sites
3' ss Seq
GCCTACGCTGCACCTTTCAGGGA
3' ss Score
7.17
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGAGGCGCCGCGCGGCCGCCGCTGTCCGCGCTGGAGACCACAGCTCGGCACAGGCGGCGCCCGTCCTCCGCGCCTCCGGAGCCTCCTCCAGCCTGCGCGCCGGGCAGATAGCACGGGCCATCTCCCACCGCGACCTACCGCTCGCCCTGCAG
Seq A exon
GGAATCCGGGAGCCGCGGGCAGTGGCCGGGCAAGTTGTGCATCGGGTTTGGTTGTGCGCGTGCACTGCGGACTGTCCTCGCGAGCACTCCTTGCTACCCCCGGCTGGCGTCCCTGCAGCCCTCCCTGCAGCCTGCGTCCACGCTCATCGCCCGAGCTCCCTTCTCCGGTTCAGACCGGGACAGGGTTTGCATTGCAGTCAGGACGTGCTTCCCCTGCGTCGAGCTTGGAGCTGCCCGCAGATCGAGTCGCCGGGGACGCTGGGGGAGGAGGGATGGGAAACCTGGGGAGGAAGCTGCGGAGAACGAATGACACCCGCAGATTTCTAAAAGCCTCTACCGTTTGCAGACGCACCGTAAGCCACGTCTTAAGCTGCTTTTAAAAGTTATGACCAGATACTGATTCTGTGACGATTCTGTGATCTACCTGAAAG
Seq C2 exon
GTTCTTGCTGGGAAACCAACAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAACAGGGCTGGCAGACCGCAGAGGAGCAAGACGAGCTAAAGGCATCCAAAGCCAGTCCACTGAGAAGCAGTTGTAATGGTGCAGCCAAGCTAGAAGACTTTGACACAAGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359_MULTIEX1-1/23=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCACAGCTCGGC
R:
TCGGCTTGTGTCAAAGTCTTCT
Band lengths:
286-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types