MmuEX0033240 @ mm10
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97059099-97060290:+
Coord C1 exon
chr11:97059099-97059192
Coord A exon
chr11:97059783-97059958
Coord C2 exon
chr11:97060043-97060290
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCATCTGTTTTGTTCATCAGGGG
3' ss Score
7.6
5' ss Seq
GAGGTTAGG
5' ss Score
4.36
Exon sequences
Seq C1 exon
GGTTCTGAGGAGGAAGAGTCTTGTGCTAGCGAGATCACCACCAGCCTGTCTGAGGAGGTGCTGGATATCAGGGGAGCTGACCGCTATCAAAAAG
Seq A exon
GGGACAGAGGCAAGGATGAGACTCAGGCCCAGCTTCTGTGCTCTTGTGTGCAGCAGTGGAACTGTGCTGGCTGGGTGGTTCTCAGCCCTGCTGCCCACGCACATCCCCAGGATATCACAAGCAGTCAGATGCCCCAGTCACCTCCCATAGCGGGCAACGCTGGGATGCCTTAGGAG
Seq C2 exon
GGCCGTGTGTTCCAGGGATTGCTGTGGGACCTCCTCGCCGCCGCTGCCTGCCAGCTGCCAGTGGGCCTGGGACAGACGTGAGCCTGTGGAATATCCTCCGCAACAACATCGGCAAAGACCTGTCCAAGGTGTCGATGCCTGTGCAGCTCAACGAACCGCTCAACACACTGCAGAGGCTCTGCGAGGAGTTGGAATATAGCAGCCTCCTGGACCAGGCCAGCCGCATGGCCGACCCCTGCGAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.518 A=0.491 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0123713=Oxysterol_BP=PU(15.7=66.3)
Main Inclusion Isoform:
ENSMUST00000090020fB2849
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATATCAGGGGAGCTGA
R:
CTGGTCCAGGAGGCTGCTATA
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types