MmuEX0033353 @ mm9
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32898560-32904945:+
Coord C1 exon
chr14:32898560-32898752
Coord A exon
chr14:32899035-32899239
Coord C2 exon
chr14:32904822-32904945
Length
205 bp
Sequences
Splice sites
3' ss Seq
TAAACGAGTTTTCTATGCAGGTG
3' ss Score
5.42
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AAGCTCGAGGGATCGCCGGCGGGCCCTTTAGAGTACCTTGGTGATGGCAAAGTTATCCCCACAGGGGCAAGGGTAGAAATATGTCTCCGAGTCCTCGTCATATTGAAAGTCCTCGATCTCCACCTCGTCGTGAAACACCGCCATGGTCACCCGGTCGGCACCGCATCAGCTTGCCTACCTGCGCCCAGGCAGG
Seq A exon
GTGGAGTCTTGTCCTCCATAGCTGACTTCAGAGGACATTAAAAGAATTGGCGGAGGCTACGCCCTCTTGAAAGGGGGAATCATTGAGGCTCAGGGAGCCACACAGCGTCCTCTCCAGTTCTCGGCCCACAGCGCTCCTGCAATTGCGTTTCAGGCGACCTTGAACTCTGAGTGACTCTTGGCCTGTTATGAGTTCTTGCCTGCAG
Seq C2 exon
GAAGCACCATGGCCCACGTTGCCTTGATTCCTGGCTTGTCTCGAGGATCTGTGGGAGCCGTCTGCACTCAGGCTGCTTCGTGGGGACTGAAGGCCAGCACTTTGCGTCACCTTACCCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCCCTTTAGAGTACCTT
R:
AGGGTAAGGTGACGCAAAGTG
Band lengths:
293-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: