MmuEX0034132 @ mm10
Exon Skipping
Gene
ENSMUSG00000023868 | Pde10a
Description
phosphodiesterase 10A [Source:MGI Symbol;Acc:MGI:1345143]
Coordinates
chr17:8756962-8898989:+
Coord C1 exon
chr17:8756962-8757093
Coord A exon
chr17:8758145-8758267
Coord C2 exon
chr17:8898861-8898989
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATATGATTGTTCCCAACAGGAG
3' ss Score
8.39
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GCTGCCTCCCATTCGCACTTAAAGGTGGGAGCAAGGGCCCCGCTCTATTGGCACTTCGAAACCGCACAGACTCTCGGGGGCAGATGAGCAATGACTCCACAGAAGGCACCGTGGGCTCCTGCAACGCAACAG
Seq A exon
GAGGCAGGGGACAATCCTTGCCCCAGCTCTGCTTTCCACCTGGGCCACACGACACCAAGGGAGAGTACGGTGCTGTATTCCAGAGACTGAGCAGTGCCCAGAAGAAAGAAGAGTTCACAAGAG
Seq C2 exon
GTTTGACGGATGAAAAGGTGAAGGCCTATCTTTCTCTCCATCCCCAGGTATTAGATGAATTTGTTTCTGAAAGTGTTAGTGCAGAGACTGTGGAAAAGTGGCTGAAGAGGAAAACCAACAAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023868_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.714 C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCCCATTCGCACTTAA
R:
TGGTTTTCCTCTTCAGCCACT
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types