MmuEX0034722 @ mm9
Exon Skipping
Gene
ENSMUSG00000020387 | Phf15
Description
PHD finger protein 15 [Source:MGI Symbol;Acc:MGI:1924151]
Coordinates
chr11:51662496-51671155:-
Coord C1 exon
chr11:51670813-51671155
Coord A exon
chr11:51668382-51668469
Coord C2 exon
chr11:51662496-51662553
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCCCCCCTTAGGGC
3' ss Score
12.57
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
AGAAACATACACAGGGGGTTGGTGAATGGTGCCGACCGCGGCCATCGCAGTTGGAGGCTATTTTTTTGGGGGGTGAGTAGCGTCCATGGAGTTACTTTGCGCCCACTCCTAGTGGCACCAGCTCTGAGCTGGAGGGCTGACCATCTTCCCAGCAGGGGTGCGGGGCTTGGGGGGCGCCGCGGCCCGGTCGCCTCCCTCGCCACGACCCCGGATGGATGCGCGCCCCCCGCCCTCCCGCGCCGGCCCCAGGAGCTCCTGGCTTCGGGAGCATCCTTCCCGCGCCGGCCCCCGCCGCCGCGCGTAGCCGAGGGCAGCGCCCCTCGGGAGGGCACCGCGGAGCAAG
Seq A exon
GGCCCCAGGCGAACACACCAGCCCTCCAGGCCCTCCGGTCCCATCTTCCTTGGGCGGGTTAGGACTCGCAGAGCAATCTACTAAGCAG
Seq C2 exon
ATGGAAGAGAAGAGGCGAAAATATTCCATCAGCAGCGACAACTCTGATACCACTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020387-'0-2,'0-1,3-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.938
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGACCCCGGATGGAT
R:
GCTGCTGATGGAATATTTTCGCC
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: