MmuEX0035109 @ mm9
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:123560967-123586972:-
Coord C1 exon
chr7:123586818-123586972
Coord A exon
chr7:123586105-123586192
Coord C2 exon
chr7:123560967-123562095
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTAGTATATTTTTATTTTAGCCA
3' ss Score
4.97
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAAGTGACGTGCAGAGCTCGGCTGGCCGCGGAGTCAGTCGAAGCTCTCCTCAGCGGCCGGCTGAGCCAGCTGAGGCGGGAGAAAAACATGGCTCGGACCTTGGAGGGCGCGAAGGCTCGGGTTGCGGTGAAGACCAAGACTCCCGCAGCGTGAG
Seq A exon
CCAGTGGGTGTTTGAATTCAGTGACACGAAGGAAGCATCCCTGTTTGAACAAGATTACTTCTTAAAAAGTATCCCTAAATCTTTCCAG
Seq C2 exon
GTCCTGGTATTTTGGAATCTACAAGAAAAAAAGATTAAGAGGTTTGTTCTCTTTTGTGGACATGGCTCAGATTTCCAACAACAGTGAATTTAAACAATGTTCATCTTCACATCCAGAACCAATAAGAACCAAAGATGTGAACAAAGCAGAAGCGTTACAGATGGAAGCAGAAGCCTTAGCAAAACTGCAGAAGGATAGACAAATGACTGACAGCCCAAGAGGCTTTGAGCTGTCTAGCAGCACTAGACAAAGAACACAAGGTTTTAACAAACAGGATTATGATCTCATGGTGTTTCCTGAGTTGGATTCCCAAAAAAGAGCAGTAGATATTGATGTAGAAAAGCTCACCCAGGCTGAACTTGAGAAGATATTGCTGGACGACAATTTTGAAACTAGAAAACCTCCTGCATTGCCAGTTACTCCTGTTCTGAGCCCTTCGTTCTCAACACAGCTGTATCTTAGACCTAGTGGTCAAAGAGGCCAGTGGCCCCCTGGATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCGGGAGAAAAACATGG
R:
ACTGTTGTTGGAAATCTGAGCCA
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: