MmuEX0035135 @ mm9
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139535742-139571086:+
Coord C1 exon
chr6:139535742-139535786
Coord A exon
chr6:139566424-139566681
Coord C2 exon
chr6:139570333-139571086
Length
258 bp
Sequences
Splice sites
3' ss Seq
AAAGTCTCATTTTTTTCCAGTTG
3' ss Score
7.14
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATTCCTGATGGCGGAGGAGGAAAAGACGGAGCGAAACACATGAAG
Seq A exon
TTGCTGTGTTAAGTCTCACAGATGGCCATTTAGGAATAAAGCATTGGTTTTAGCTCACAGTTCAAAGCAGAGTCCATCATGATTGGGAGCTGAGGCAACTCGGCCACACCCCTTCCACAAGCAACAATGGAAGGATACATAAATGGATTCTGCTTCTTGGATCCTTTTCTCCAATTCTCCAAAGTTCAATAATAATCCATTTATGGAATGGAGCCACCCACGGTAGGCGGGAGGTCCTCATCAATTAGCACAACCAAG
Seq C2 exon
GAAAATTTAGAATTTCTTTTATAATATCAAGAAGACATTTGGAGCCAAATAAATCCTCTGTTACACAAAATCAAAAATGGCATACAGTTGGCAAACAGAGCCAAATCGCACTGAACCACAGGAAGATGGATCTGATACCCAACAATTTCACCATACAAACCAGCACCTTTCTTCCAGTCAAGTCAGGTTGGGTTTTGATCAGCTGGTGGAAGAGATCAATAATAAGACTCCACTGTCTGAGAGTGAAAAGGAAGAAGACACGTATTTTGTGCCAGATGCACCAAACTTGGGTTCAAAATGGCCATCCATATATGAAACACACCCAAGATACTTCAGTGAATTCACTTCTCAGAGCCCTGACTCCTCCCAGCTTCGGTTTGGAAAACTATCAGCCATTGGTTTTAATCCTGCTGTACTACCAACCCATCAGCTCATTCATGAGGGAGCTTCCTGGAGAAATCCCAGTGGAAAATATCATGGCATCGAGTATCCCAGATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.668
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGAGCGAAACACATGAA
R:
GCATCTGGCACAAAATACGTGT
Band lengths:
301-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: