MmuEX0036730 @ mm10
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5057458-5064095:+
Coord C1 exon
chr6:5057458-5057578
Coord A exon
chr6:5062118-5062192
Coord C2 exon
chr6:5063991-5064095
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTGGTCTCTTTTCAGAAT
3' ss Score
10.1
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACGAGGACGGGCTGGGCATAAGCATCATTGGAATGGGCGTTGGTGCTGATGCTGGATTGGAGAAGCTGGGGATATTTGTCAAGACAGTGACTGACGGAGGTGCTGCTCAGCGGGATGGCAG
Seq A exon
AATCTGAAAGCAAATCTGGTCACGACTTTTAAGACTACATTGAAAACAAGCAGAAGTGGTTTGTCCTTGGAAATG
Seq C2 exon
GATTCAAGTCAATGACCAGATTGTGGAAGTTGATGGAATCAGCCTGGTGGGGGTCACACAGAATTTTGCTGCAACCGTTCTGCGGAATACCAAGGGCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_MULTIEX4-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(47.1=100)
A:
NO
C2:
PF0059519=PDZ=FE(41.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATTGGAATGGGCGTTG
R:
GCAGAACGGTTGCAGCAAAAT
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types