MmuEX0036920 @ mm9
Exon Skipping
Gene
ENSMUSG00000028591 | Pramef12
Description
PRAME family member 12 [Source:MGI Symbol;Acc:MGI:1924882]
Coordinates
chr4:143985583-143998367:-
Coord C1 exon
chr4:143998260-143998367
Coord A exon
chr4:143993241-143993353
Coord C2 exon
chr4:143985583-143985905
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTACCCTCTACCTTGGCAGCGT
3' ss Score
8.31
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTCTTAGTCTGCCCTGGTCAGGGGAATTCAGTTCTTTGGCGGATATTCCTACGCCCACTTCAGTAGAAGATCTCTGGCCTCCGGAGTTCAGCGGAGACTTCATTGCAG
Seq A exon
CGTGCTGGCTTTCTGCATAAAACATAACAGGAGGACTCAGTTCCTGGCTTTGCTCATTGAAGAGTGGCGTCACTAGCCTGAGCATTCTGGTTACATATTCTGGTGGGACTCTG
Seq C2 exon
GATCATCAGTCTCCCTACAGATCTGTGAAGATGAGCTTGCGTGCCACACCCACACTCCTACAGCTCGCAATGCAAAGCCTGCTGAGGGATGAGGCCTTGGCCATCTCTGCTCTGCAGGACCTGCCCATGGAGCTCCTCCCACCACTCTTCAAAGATGCCATCACTCACAAACGACTTAACATCCTGAGGAAGATGGTGCAGGTCTGGCCTTTTCCCTGTCTCCCGCTGGGTGGTCTGATGAAGATGAAGACACCATACCTGGATATCTTGCAAACCGTACTGGATGGGGTTGATGCACTGCTTGACCAGAATACTCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028591_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAGATCTCTGGCCTCCGG
R:
AGACCTGCACCATCTTCCTCA
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types